Yusha Araf

Journal Article

The Impact of Nutrition on DNA Methylation: Methodological Challenges in Understanding Cause and Effect

Yusha Araf, Theo Portlock, Justin M. O’Sullivan

Journal Article

Complete genome sequence of chicken anemia virus from a field outbreak in Bangladesh

M. Akter, S. M. Nazmul Hasan, Nurejunnati Jeba, Anandha Mozumder, M. Mou, Yusha Araf, Roni Mia, Sharmin Akter, Md. Salauddin, Md Zaminur Rahman, Muhammad Shahdat Hossain, Sukumar Saha, Tofazzal Islam, M. Hossain

Journal Article

Exploring the dynamics of SARS-CoV-2 and HIV Co-infection: Mutation risks, therapeutic efficacy, and future variant prevention.

Sumaiya Tasnim Maliha, Rabeya Fatemi, M. Akter, Qingcong Zheng, Yusha Araf, Tahani Tabassum, M. Munif, Sukumar Saha, Mengzhou Xue, Huiqing Wang, Chunfu Zheng, M. Hossain

Journal Article

Comprehensive analysis of antigenic variations and genomic properties of hepatitis B virus in clinical samples in the mid-north east region of Bangladesh.

M. Hossain, Mahfuz Islam, Yusha Araf, S. K. Paul, Sharmin Akter, Mohammad Kamruzzaman Khan, M. Ahmed, Sakirul Khan, S. M. Akbar, Chitta Ranjan Debnath

Journal Article

COVID-19 and the brain: understanding the pathogenesis and consequences of neurological damage

Maliha, S.T., Fatemi, R., Araf, Y.

Journal Article

Emerging health implications of climate change: dengue outbreaks and beyond in Bangladesh.

Yusha Araf, M. Akter, Jingbo Zhai, Chunfu Zheng, M. Hossain

Journal Article

Insights into the Transmission, Host Range, Genomics, Vaccination, and Current Epidemiology of the Monkeypox Virus

Yusha Araf, Jannatul Ferdous Nipa, Sabekun Naher, Sumaiya Tasnim Maliha, Hasanur Rahman, Kazi Ifthi Arafat, Mohammad Raguib Munif, Md Jamal Uddin, Nurejunnati Jeba, Sukumar Saha, Jingbo Zhai, S. M. Nazmul Hasan, Mengzhou Xue, Md. Golzar Hossain, Chunfu Zheng, Annamaria Pratelli

Journal Article

A computational approach to design a polyvalent vaccine against human respiratory syncytial virus

Moin, A.T., Ullah, M.A., Patil, R.B., Faruqui, N.A., Araf, Y., Das, S., Uddin, K.M.K., Hossain, M.S., Miah, M.F., Moni, M.A., Chowdhury, D.U.S., Islam, S.

Journal Article

Corrigendum: Insights into the coinfections of human immunodeficiency virus-hepatitis B virus, human immunodeficiency virus-hepatitis C virus, and hepatitis B virus-hepatitis C virus: prevalence, risk factors, pathogenesis, diagnosis, and treatment (Frontiers in Microbiology, (2022), 12, (780887), 10.3389/fmicb.2021.780887)

Shahriar, S., Araf, Y., Ahmad, R., Kattel, P., Sah, G.S., Rahaman, T.I., Sadiea, R.Z., Sultana, S., Islam, M.S., Zheng, C., Hossain, M.G.

Journal Article

Marburg virus outbreak in 2022: a public health concern.

Yusha Araf, Sumaiya Tasnim Maliha, Jingbo Zhai, Chun-Zao Zheng

Journal Article

SARS‐CoV‐2 and dengue virus co‐infection: Epidemiology, pathogenesis, diagnosis, treatment, and management

Chowdhury Nusaiba Binte Sayed Prapty, Raad Rahmat, Yusha Araf, Samiha Kamal Shounak, Noor‐A‐Afrin, Tanjim Ishraq Rahaman, Mohammad Jakir Hosen, Chunfu Zheng, Md. Golzar Hossain

ORCID Work

Unravelling the Oncogenic Potential and Prognostic Significance of CKS1B in Human Lung Adenocarcinoma and Squamous Cell Carcinoma: A Comprehensive Computational Analysis

Abu Tayab Moin, M. Ullah, Nairita Ahsan Faruqui, Yusha Araf, Tanjim Ishraq Rahaman, Kajol Ahsan, M. Faruq, R. H. Bhuiyan, M. J. Hosen

Journal Article

3D Bioprinting for Regenerating COVID-19-Mediated Irreversibly Damaged Lung Tissue

Akter, F., Araf, Y., Promon, S.K., Zhai, J., Zheng, C.

Journal Article

Age and gender-related differences in quality of life of Bangladeshi patients with Down Syndrome: A cross-sectional study

Nafisa Nawal Islam, Ahmed Faisal Sumit, Md. Mottakin Chowdhury, Md. Asad Ullah, Yusha Araf, Bishajit Sarkar, David Gozal

Journal Article

An In-Silico Identification of Potential Flavonoids against Kidney Fibrosis Targeting TGFβR-1

MD. Hasanur Rahman, Partha Biswas, Dipta Dey, Md. Abdul Hannan, Md. Sahabuddin, Yusha Araf, Youngjoo Kwon, Talha Bin Emran, Md. Sarafat Ali, Md Jamal Uddin

Journal Article

Bioinformatics analysis on the prognostic significance of SOX9 gene and its transcriptional product in colorectal cancer

Ullah, M.A., Islam, N.N., Sarkar, B., Araf, Y., Zohora, U.S., Rahman, M.S.

Journal Article

Circulating tumor DNA in cancer diagnosis, monitoring, and prognosis

Sudeepto Saha, Yusha Araf, Salman Khan Promon

Journal Article

Coinfection of COVID-19 and Dengue: A Case Report

Prapty, C.N.B.S., Ahmed, N., Araf, Y., Yang, Z., Zhai, J., Hosen, M.J., Zheng, C.

Journal Article

Corticosteroids for COVID-19: worth it or not?

Fariya Akter, Yusha Araf, Mohammad Jakir Hosen

Journal Article

COVID-19-Associated Candidiasis: Possible Patho-Mechanism, Predisposing Factors, and Prevention Strategies

Nafisa Ahmed, Maiesha Samiha Mahmood, Md. Asad Ullah, Yusha Araf, Tanjim Ishraq Rahaman, Abu Tayab Moin, Mohammad Jakir Hosen

Journal Article

COVID-19-associated-mucormycosis: possible role of free iron uptake and immunosuppression

Tahani Tabassum, Yusha Araf, Abu Tayab Moin, Tanjim Ishraq Rahaman, Mohammad Jakir Hosen

Journal Article

Differential gene expression profiling reveals potential biomarkers and pharmacological compounds against SARS-CoV-2: Insights from machine learning and bioinformatics approaches

Hoque, M.N., Khan, Md.A., Hossain, Md.A., Hasan, Md.I., Rahman, Md.H., Soliman, M.E., Araf, Y., Zheng, C., Islam, T.

ORCID Work

Exploring different virulent proteins of human respiratory syncytial virus for designing a novel epitope-based polyvalent vaccine: Immunoinformatics and molecular dynamics approaches

Moin, A.T., Ullah, M.A., Patil, R.B., Faruqui, N.A., Sarkar, B., Araf, Y., Das, S., Uddin, K.M.K., Hossain, M.S., Miah, M.F., Moni, M.A., Chowdhury, D.U.S., Islam, S.

Journal Article

Exploring the prognostic significance of FOXM1 gene expression in human breast cancer by bioinformatics analysis

Ullah, M.A., Araf, Y., Sarkar, B., Islam, N.N., Moin, A.T., Zohora, U.S., Rahman, M.S.

Journal Article

Functional food: complementary to fight against COVID-19

Maisha Farzana, Sagarika Shahriar, Faria Rahman Jeba, Tahani Tabassum, Yusha Araf, Md. Asad Ullah, Jarin Tasnim, Agnila Chakraborty, Taslima Anjum Naima, Kay Kay Shain Marma, Tanjim Ishraq Rahaman, Mohammad Jakir Hosen

Journal Article

Immunoinformatic Design of a Multivalent Peptide Vaccine Against Mucormycosis: Targeting FTR1 Protein of Major Causative Fungi

Yusha Araf, Abu Tayab Moin, V. Timofeev, Nairita Ahsan Faruqui, Syeda Afra Saiara, Nafisa Ahmed, Md Sorwer Alam Parvez, Tanjim Ishraq Rahaman, Bishajit Sarkar, M. Ullah, M. J. Hosen, Chun-Zao Zheng

Journal Article

Immunoinformatics Approach to Design Novel Subunit Vaccine against the Epstein-Barr Virus

Abu Tayab Moin, Rajesh B. Patil, Tahani Tabassum, Yusha Araf, Md. Asad Ullah, Hafsa Jarin Snigdha, Tawfiq Alam, Safwan Araf Alvey, Bashudev Rudra, Sohana Akter Mina, Yasmin Akter, Jingbo Zhai, Chunfu Zheng, Clinton J. Jones

ORCID Work

Insights from a computational analysis of the SARS-CoV-2 Omicron variant: Host-pathogen interaction, pathogenicity and possible therapeutics

Parvez, Md.S.A., Saha, M.K., Ibrahim, Md., Araf, Y., Islam, Md.T., Ohtsuki, G., Hosen, M.J.

Journal Article

Insights from a computational analysis of the SARS‐CoV‐2 Omicron variant: Host–pathogen interaction, pathogenicity, and possible drug therapeutics

Parvez, M.S.A., Saha, M.K., Ibrahim, M., Araf, Y., Islam, M.T., Ohtsuki, G., Hosen, M.J.

Journal Article

Insights Into the Coinfections of Human Immunodeficiency Virus-Hepatitis B Virus, Human Immunodeficiency Virus-Hepatitis C Virus, and Hepatitis B Virus-Hepatitis C Virus: Prevalence, Risk Factors, Pathogenesis, Diagnosis, and Treatment

Shahriar, S., Araf, Y., Ahmad, R., Kattel, P., Sah, G.S., Rahaman, T.I., Sadiea, R.Z., Sultana, S., Islam, M.S., Zheng, C., Hossain, M.G.

Journal Article

Management of asthma patients during the COVID-19 pandemic: pathophysiological considerations to address the challenges

Tahani Tabassum, Ahsab Rahman, Yusha Araf, M. Ullah, M. J. Hosen

Journal Article

Omicron variant of SARS‐CoV‐2: Genomics, transmissibility, and responses to current COVID‐19 vaccines

Yusha Araf, Fariya Akter, Yan‐dong Tang, Rabeya Fatemi, Md. Sorwer Alam Parvez, Chunfu Zheng, Md. Golzar Hossain

Journal Article

Pathogenesis and potential therapeutic application of stem cells transplantation in Huntington’s disease

Sudeepto Saha, Manami Jayati Dey, Salman Khan Promon, Yusha Araf

Book Chapter

Potentials of mycosynthesized nanomaterials for efficient remediation of environmental contaminants

Muzahid, A.N.M., Araf, Y., Mahmud, N.U., Sarker, A., Akter, F., Chowdhury, M.T.I., Shiddiky, M.J.A., Sohrawardy, H., Chakraborty, M., Islam, T.

Journal Article

The Deltacron conundrum: Its origin and potential health risks

Saria Farheen, Yusha Araf, Yan‐Dong Tang, Chunfu Zheng

Journal Article

An Updated Overview of Herpes Simplex Virus-1 Infection: Insights from Origin to Mitigation Measures

A. Shohael, Abu Tayab Moin, M. A. Chowdhury, Sumaiya Hafiz Riana, M. Ullah, Yusha Araf, Bishajit Sarkar

Journal Article

Assessing drug repurposing option for emerging viral diseases: concerns, solutions, and challenges for forthcoming viral battles

Subyeta Sarwar, Faiza Khondokar, Hiya Islam, Md Ullah, Yusha Araf, Bishajit Sarkar, MD Rahman

Journal Article

Blueprint of epitope-based multivalent and multipathogenic vaccines: targeted against the dengue and zika viruses

Sarkar, B., Ullah, M.A., Araf, Y., Das, S., Hosen, M.J.

Journal Article

Choice of assemblers has a critical impact on de novo assembly of SARS-CoV-2 genome and characterizing variants

Islam, R., Raju, R.S., Tasnim, N., Shihab, I.H., Bhuiyan, M.A., Araf, Y., Islam, T.

Journal Article

Computational designing of a novel subunit vaccine for human cytomegalovirus by employing the immunoinformatics framework

Moin, A.T., Singh, G., Ahmed, N., Saiara, S.A., Timofeev, V.I., Ahsan Faruqui, N., Sharika Ahsan, S., Tabassum, A., Nebir, S.S., Andalib, K.M.S., Araf, Y., Ullah, M.A., Sarkar, B., Islam, N.N., Zohora, U.S.

Journal Article

Computer-assisted evaluation of plant-derived β-secretase inhibitors in Alzheimer’s disease

Ullah, M.A., Johora, F.T., Sarkar, B., Araf, Y., Ahmed, N., Nahar, A.N., Akter, T.

Journal Article

Designing novel epitope-based polyvalent vaccines against herpes simplex virus-1 and 2 exploiting the immunoinformatics approach

Bishajit Sarkar, M. Ullah, Yusha Araf, Sowmen Das, M. Rahman, Abu Tayab Moin

Journal Article

Genome Sequences of Two Novel Coronavirus (SARS-CoV-2) Isolates from Dhaka, Bangladesh

M. Matin, Abdullah Al Nahid, Bishajit Sarkar, M. A. Ullah, Yusha Araf, N. Adnan, R. Islam, Mohammad Shahedur Rahman

Journal Article

Gut Microorganisms and Neurological Disease Perspectives

Nairita Ahsan Faruqui, Durdana Hossain Prium, Sadrina Afrin Mowna, Md. Asad Ullah, Yusha Araf, Bishajit Sarkar, Umme Salma Zohora, Mohammad Shahedur Rahman

Journal Article

Identification of the most potent acetylcholinesterase inhibitors from plants for possible treatment of Alzheimer’s disease: a computational approach

Sarkar, B., Alam, S., Rajib, T.K., Islam, S.S., Araf, Y., Ullah, M.A.

Journal Article

Immunoinformatics-guided designing and in silico analysis of epitope-based polyvalent vaccines against multiple strains of human coronavirus (HCoV)

Bishajit Sarkar, Asad Ullah, Yusha Araf, Nafisa Nawal Islam, Umme Salma Zohora

Journal Article

In silico assessment of EpCAM transcriptional expression and determination of the prognostic biomarker for human lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC)

Abu Tayab Moin, Bishajit Sarkar, M. Ullah, Yusha Araf, Nafisa Ahmed, Bashudev Rudra

Journal Article

Influence on attitudes and lifestyle due to lockdown amidst COVID-19 pandemic: a perception-based analysis among Bangladeshi residents

Islam, M.S., Ullah, M.A., Islam, U.S., Hossain, S., Araf, Y., Das, A., Khan, A.N., Islam, N.N., Sarkar, B., Shohael, A.M.

Journal Article

Potential roles of vitamin D in the treatment of COVID-19 patient and improving maternal and child health during pandemic

Ahmed, N., Araf, Y., Ullah, M.A.

Journal Article

Prospect of 3D bioprinting over cardiac cell therapy and conventional tissue engineering in the treatment of COVID-19 patients with myocardial injury

Fariya Akter, Yusha Araf, Iftekhar Bin Naser, Salman Khan Promon

Journal Article

Prospective Selected Biomarkers in Covid-19 Diagnosis and Treatment

Tahani Tabassum, Ahsab Rahman, Yusha Araf, Md A Ullah, Mohammad J Hosen

Journal Article

Silent hypoxia in COVID-19: pathomechanism and possible management strategy

Rahman, A., Tabassum, T., Araf, Y., Al Nahid, A., Ullah, M.A., Hosen, M.J.

Journal Article

The promising rise of bioprinting in revolutionalizing medical science: Advances and possibilities

Radia Jamee, Yusha Araf, Iftekhar Bin Naser, Salman Khan Promon

ORCID Work

<strong>COVID-19 Pandemic Burden on Global Economy: A Paradigm Shift</strong>

K Taeen Zaman, Hiya Islam, Asir Newaz Khan, Dipita Saha Shweta, Ahsab Rahman, Jaasia Masud, Yusha Araf, Bishajit Sarkar, Md. Asad Ullah

Journal Article

A Generalized Overview of SARS-CoV-2: Where Does the Current Knowledge Stand?

Md. Asad Ullah, Hiya Islam, Ahsab Rahman, Jaasia Masud, Dipita Saha Shweta, Yusha Araf, Syed Muktadir Al Sium, Bishajit Sarkar

Journal Article

A systematic and reverse vaccinology approach to design novel subunit vaccines against Dengue virus type-1 (DENV-1) and human Papillomavirus-16 (HPV-16)

Bishajit Sarkar, Md Asad Ullah, Yusha Araf

Journal Article

Analysis of plant-derived phytochemicals as anti-cancer agents targeting cyclin dependent kinase-2, human topoisomerase IIa and vascular endothelial growth factor receptor-2

Yusha Araf

Journal Article

Curcumin analogs as the inhibitors of TLR4 pathway in inflammation and their drug like potentialities: a computer-based study

Ullah, M.A., Johora, F.T., Sarkar, B., Araf, Y., Rahman, M.D.H.

ORCID Work

Curcumin Analogues as the Inhibitors of TLR4 Pathway in Inflammation and Their Drug Like Potentialities: A Computer-based Study

M. Ullah, F. Johora, Bishajit Sarkar, Yusha Araf, M. Rahman

Journal Article

Dengue Outbreak is a Global Recurrent Crisis: Review of the Literature

Md. Asad Ullah, Yusha Araf, Nairita Ahsan Faruqui, Sadrina Afrin Mowna, Durdana Hossain Prium, Bishajit Sarkar

Journal Article

Engineering a novel subunit vaccine against SARS-CoV-2 by exploring immunoinformatics approach

Bishajit Sarkar, Md Asad Ullah, Yusha Araf, Mohammad Shahedur Rahman

Journal Article

Immunoinformatics-guided designing of epitope-based subunit vaccines against the SARS Coronavirus-2 (SARS-CoV-2)

Sarkar, B., Ullah, M.A., Johora, F.T., Taniya, M.A., Araf, Y.

ORCID Work

Oncolytic Virus Therapy: What We Know Till Now

Ali Wahab Showhardo, Yusha Araf

Journal Article

Pathogenesis, Diagnosis and Possible Therapeutic Options for COVID-19

Md. Asad Ullah, Yusha Araf, Bishajit Sarkar, Abu Tayab Moin, Riyan Al Islam Reshad, MD. Hasanur Rahman

Journal Article

Potential Effects of the COVID-19 Pandemic on Future Birth Rate

Md. Asad Ullah, Abu Tayab Moin, Yusha Araf, Atiqur Rahman Bhuiyan, Mark D. Griffiths, David Gozal

Journal Article

SARS-CoV-2: a new dimension to our understanding of coronaviruses

Yusha Araf, Nairita Ahsan Faruqui, S. Anwar, M. J. Hosen

ORCID Work

The essential facts of Wuhan Novel Coronavirus outbreak in China and Epitope-based vaccine designing against COVID-19

ORCID Work

The First Wave of COVID-19 Pandemic: Experiences from Bangladesh

Tahani Tabassum, Maisha Farzana, M. Ullah, Yusha Araf, Md. Nazmul Islam Prottoy, M. J. Hosen

Journal Article

Women's Knowledge, Attitude, and Perceptions Toward COVID-19 in Lower-Middle-Income Countries: A Representative Cross-Sectional Study in Bangladesh

Saeed Anwar, Yusha Araf, Asir Newaz Khan, Md. Asad Ullah, Nur Hoque, Bishajit Sarkar, Riyan Al Islam Reshad, Rahatul Islam, Nurshad Ali, Mohammad Jakir Hosen

Journal Article

Computational Assessment and Pharmacological Property Breakdown of Eight Patented and Candidate Drugs against Four Intended Targets in Alzheimer’s Disease

Bishajit Sarkar, S. Islam, M. Ullah, S. Hossain, Md. Nazmul Islam Prottoy, Yusha Araf, M. Taniya

ORCID Work

Integrated Bioinformatic Approach to Identify Potential Biomarkers against Idiopathic Pulmonary Fibrosis

Ullah, M.A., Sarkar, B., Araf, Y., Prottoy, M.N.I., Saha, A., Jahan, T., Boby, A.S., Islam, M.S.

Journal Article

Molecular Docking and Pharmacological Property Analysis of Phytochemicals from lt;i gt;Clitoria ternatea lt;/i gt; as Potent Inhibitors of Cell Cycle Checkpoint Proteins in the Cyclin/CDK Pathway in Cancer Cells

Asad Ullah, Nazmul Islam Prottoy, Yusha Araf, Sohana Hossain, Bishajit Sarkar, Ananna Saha

Journal Article

Thrombolytic Activity, Drug Likeness Property and ADME/T Analysis of Isolated Phytochemicals from Ginger (<i>Zingiber officinale</i>) Using <i>In Silico</i> Approaches